All functions

add_regime_shift_highlight()

Highlight specific time spans

compute_ccm()

Run CCM on each pair of time series

compute_ccm_links()

Identify the significant CCM links

compute_dynamic_stability() build_dynamic_stability_plan()

Dynamic stability analysis for community time series

compute_eigen_decomp()

Compute eigen-decompositions of the Jacobian matrices

compute_simplex()

Run univariate analysis on each time series

compute_smap_coeffs()

Compute S-map coefficients for a community

compute_smap_matrices()

Generate the matrices of S-map coefficients

compute_svd_decomp()

Compute singular value decompositions of the Jacobian matrics

compute_total_variance()

Compute total variance of the Jacobian matrics

compute_volume_contraction()

Compute volume contraction of the Jacobian matrics

extract_matrix_values()

Convert list of eigenvalues into long-form data.frame

get_smap_coefficients()

Compute S-map coefficients for a given target variable

maizuru_block

Time series for the Maizuru Bay fish community

make_portal_block()

Get a data.frame of Portal rodent abundances

make_surrogate_annual_spline()

make_surrogate_annual_spline

norm_rescale()

linear rescaling function

plot_eigenvalues() plot_svd_values()

Plot eigenvalues of the S-map (coefficient) matrices

plot_eigenvectors() plot_svd_vectors()

Plot time-varying vector components

plot_indicator_values() plot_volume_contraction() plot_total_variance()

Plot numerical metrics computed on the S-map (coefficient) matrices

plot_network()

plot_network

plot_smap_coeffs()

plot_smap_coeffs

plot_time_series()

plot_time_series

simulate_3sp_food_chain()

Get a data.frame of simulated abundances (3-species food chain)

simulate_LPA_flour_beetles()

Get a data.frame of simulated abundances (3-stage flour beetles)

simulate_resource_competition() sim_resource_competition_12sp()

Get a data.frame of simulated abundances (resource competition)